bgott,
I don't know how detailed your tour was but did they mention that the clyinders on submarine diesels are typically not "square" with, i.e. alligned radially to the rotation of the crankshaft like say for instance a Cummins or Ford PowerJoke? They are slightly inclined, in the plane of rotation, to reduce "piston slap". This seriously reduces their acoustic signature.
I was only on two diesel boats, one was on static display in Hawaii (WW II relic) and the other is a Navy research submarine, hull number 555, the Dolphin (recently in the news because it was on fire) that was at the lab where I worked. The crew of the Dolphin sported "Diesel boats forever" on their T shirts. They do smell different from the nukes but the crew doesn't glow in the dark.
Patrick