Most of the EPA stoves require a blower to get heat. If I was going to buy one tomorrow I would go with a Hearthstone. They are made out of soapstone and you can get radiant heat. Have you considered propane? You would not have the mess of wood.
I have read thru the post, and someone may have already metioned it, but I would build the house around the wood stove and use a high efficiency wood stove. A centered wood stove in a home is hard to beat.
I think a interior chimeny is mainly better when you are building a fire because the chimney is warmer than a exterior chimney. After the fire is built there is not much difference. As long as the chimney has good draft it is fine.