I have recently had the same problem. It is not an issue with the pedals not being centered. There is an eccentric neutral adjustment stud on the the side of the transmission that takes care of that problem. I readjusted mine and it is not the problem. I also took the damper off and cleaned all linkages and this did not help either. Mine will stop just fine if I am REVERSING and then take my foot off the pedal, it is just after depressing FORWARD and releasing that it seems to "roll on" further then it should. JD says it should stop within 4-8' after releasing the pedal, and I know mine rolls way past that. I have also noticed that with the throttle full up, it does not roll quite as far, but seems to have a little more braking action.
I don't know what the problem is, but it has me confused as well!