This is an old thread, but I figured an update was in order. This is Kubota's official statement concerning biodiesel/SVO:
Kubota Engine America - Compact Diesel Engines
They also explicitly state:
"The use of biodiesel does not affect the Kubota warranty for material and workmanship. However, any failures attributed to the use of biodiesel, or any diesel fuel, are not factory defects and will not be covered under Kubota's warranty."
So, unless they can PROVE the failure was caused by your choice of fuel, they will still honor your warranty.
I've put thousands of miles on a 2003 VW Golf TDI and a 2003 Dodge 2500 (Cummins common rail) on
STRAIGHT vegetable oil, NOT biodiesel. personally, I'm no fan of biodiesel as it still requires the use of petrochemically-derived methanol and lab grade KOH or NaOH to make (no, you cannot use corn-based ethanol or woodash lye for transesterification). If you had the proper equipment and sufficient land, you could be nearly self-sufficient fuelwise by using straight vegetable oil. With biodiesel, you are still a slave to the oil/gas companies for your methanol. The Elsbett company in Germany has been converting production diesel engines to run on SVO/WVO for decades. Criticisms about WVO/SVO causing coking of cylinder heads are mostly BS thrown out by uneducated chicken-littlers or people who have a stake in the oil industry's monopoly. This problem does happen but only to those who improperly design or install their system. If you use well-filtered (2 micron or better nominal) and most critically WELL DE-WATERED (preferably done by a centrifuge filtration system) non-hydrogenated oil like canola, sunflower, peanut, or soybean in a system where the oil reached at least 165F before flowing through the injectors, there will be no coking.