I'm not necessarily disputing any answers given above, but it does remind me of how the inline fuel filter on my riding mower operates. It's a gravity feed from the tank to the carburetor, with the fuel filter mounted in the line. The filter is mounted so that fuel enters it, and flows slightly uphill in the clear filter housing to the carburetor. Oddly enough, while running the filter looks nearly empty , and only looks full of fuel when the engine is off. This is normal for my mower, and has run like that using at least 3 different filters over the last 6 years. There are no running problems with the engine.
My point is that, while running, a fuel filter may in fact look nearly empty . The gasoline can be seen rapidly wicking through the filter element, but not filling the filter housing. It's a bit odd. On the other hand, the glass sediment bowl on my big tractor always looks full , running or not. It's also a gravity feed.