Okay, so let's say it is a coil issue. Will the stealership have a tool that can detect this problem, in the shop, even when the ECU won't? With Japanese cars of this age this is not the case. If the problem doesn't happen when they run the diagnostic it will not detect it. In fact, on my old Maxima the dealership could not even tell me which coil was malfunctioning even when it did throw a code unless the problem happened when they ran the diagnostic. And again, it makes no sense to me that an ECU could possibly miss a series of three or four total misfires in a row and not throw a code. And if they are occuring, as you suggest, even in other gears and I only feel them when in OD, then that is even less likely.
But, I'm generally a pretty poor automotive diagnostician. So if the dealership can detect a latent coil issue with their equipment then I'll take it and have them try it but they don't do that sort of thing for free. There is nothing that I hate worse than taking a vehicle to the stealership and asking them to diagnose a vague problem. It gets awful pricey.
Fortunately, there is an easy way to test the coil packs in your vehicle and make sure they're working as they should. You need to use ohm meter to test the coil pack for continuity. Make sure you have the approximate ohm values for the coil pack. To find this information, research your car's engine on the Internet or purchase a Chilton's or Haynes manual to find out what the mega ohms reading on the coil pack should be.
Okay, so let's say it is a coil issue. Will the stealership have a tool that can detect this problem, in the shop, even when the ECU won't? With Japanese cars of this age this is not the case. If the problem doesn't happen when they run the diagnostic it will not detect it. In fact, on my old Maxima the dealership could not even tell me which coil was malfunctioning even when it did throw a code unless the problem happened when they ran the diagnostic. And again, it makes no sense to me that an ECU could possibly miss a series of three or four total misfires in a row and not throw a code. And if they are occuring, as you suggest, even in other gears and I only feel them when in OD, then that is even less likely.
But, I'm generally a pretty poor automotive diagnostician. So if the dealership can detect a latent coil issue with their equipment then I'll take it and have them try it but they don't do that sort of thing for free. There is nothing that I hate worse than taking a vehicle to the stealership and asking them to diagnose a vague problem. It gets awful pricey.
Starting to think it is time for a Nissan Titan! (Used. I do not buy new trucks).
Because your truck is having an issue at 125k, you are willing to switch brands?
You mentioned that your ATF level is high (I think). If it is, try dropping it down to the proper level, allowing for if the fluid is at operating temperature. (Some sticks show both Hot and Cold levels, can't remember what those Fords do).
Well, its a long story. I've always been a Nissan guy (we all have a preferred brand). But when I needed and bought this truck (2003) neither Nissan nor Toyota made real full-sized trucks. I've never loved this truck and there are lots of things I've never liked about it. I had to replace the AC system after 5 years to the tune $900 and the rear window has leaked for years and it smells like mildew inside. It has never had adequate shocks (in my opinion) or brakes (in my opinion) but I could have easily taken care of that if I'd wanted to so I can't really complain. The suspension is too wallowy off road. Fine on highway. The steering is one of my biggest complaints. It is terribly vague and sloppy. Interior was cheap and rattly from day one. Trim pieces fall off. When it is in 4wd it is hard to turn (off road of course). At low speeds the throttle is like an on/off switch. It is hard to do anything precisely (backing or hitching to a trailer for instance).
Having said all that, it is comfortable to travel in, even long trips. I've never had any serious engine or mechanical problems. Nothing (mechanical) has ever leaked. It burns a little oil but replacing the PCV recently might help that. It has never once had or needed a front end alignment and I'm only on my third set of tires that still have 10k miles left in them and the middle set was used. Tire wear has always been uniform. That is hard to beat. It has plenty of power. Towing horses, tractors and cars has been trouble free. It has done everything I have asked it to do. It goes from episodes of hard use and abuse to long spells of no use. My kids grew up in it. Both drove it. My daughter still loves it like a pet and wants me to give it to her even though she is married. There has been no rust. So, in this regard it has grown on me and there is nothing like a beat up smelly truck that you don't have to worry about. If and when I let it go I will be sad.
But, I do some hauling of my car to the track. Usually not more than 3-4 hours away but I need to be confident that it will not leave me stranded. If I can get this problem sorted out I'll keep on going. However, I usually sell whatever I'm driving when repairs bills mount and reliability goes down. Since it probably isn't worth much I might actually give it to my daughter as a farm truck on of these days.