Two more reasons for sitting everything down weren't mentioned. First reason is safety. Kids play, hoses rupture etc. Implements and loaders can drop very fast even when the tractor isn't running. Sitting everything down is a simple thing that can prevent a serious accident. Tires are the other reason. I left a bucket loaded with a bit of ballast and a heavy 3ph implement up for several days. It was cool, but not cold. I started down the highway at road speed, and it was like riding a horse at a canter for a 1/2-mile or so. Of course, that probably wouldn't happen if I had radial tires.
I haven't experienced jerkiness when lowering the 3ph, irrespective of the weight or flow control valve setting. If Bird's suggestion doesn't cure the problem, I'd look at the 3ph arms to see if they're binding in some way, and maybe put another implement on the 3ph to see if the jerkiness persists. I'd also note if the jerkiness occurs only when the hitch control lever is barely in a lower position, or whether it occurs throughout the lever range. Another possible cure is changing the hydraulic oil and filter if there's any doubt about it's condition. I decided to assume that a former owner carried out scheduled maintenance, and I didn't change oil until the next scheduled time. I was developing some minor hydraulic oddities that went away after I changed the oil.