A couple of suggestions. How about a new remanufactured engine/ and or a new engine direct from John Deere. The dealer is going to do a lot of inspection work, creating a parts list, ordering materials, follow up when something is missed, etc. extending the repair time. It maybe cheaper and quicker to purchase another engine. Your present engine should have a core value to it. Maybe that cost could cover the replacement labor for another engine. Plus another engine should/ could come with some type of warranty beyond what the dealer is going to supply. Just a thought.