Don't mean to hijack the thread but I had what sounds like a similar problem on my B26TLB after 400 hr. service which included filter changeouts and new load of super UDT. See post:
http://www.tractorbynet.com/forums/kubota-owning-operating/348415-b-26-hydraulic-pump-noise-post4297282.html#post4297282
Since then I have run or fully stroked all hydraulics with no improvement. Went to plow after the big snow (coldest start since the service) letting tractor warm up for a good 10-15 minutes and had the now common whine at start up. After plowing a minute or so the tractor forward progress slowed down to almost stop while holding speed control pedal in same position and with no change in engine RPM. Came off speed control pedal and let engine run a bit tried it again and the tractor started moving then struggled again, I shut down it and checked hyd. fluid which was about a quart low. I'm not sure where it went with no signs of external leakage but this was the first time I'd checked it in a while and since removing the Hoe for the grading blade. Topped it off and restarted, the speed control was better - as I continued to plow and fluid warmed up, whine subsided and everything ran fine.
I suspect the culprit is something from the service maintenance process since problems started pretty much right after. The discussion about gasket leaks on hydraulic oil filter (mounted on side of tank) caught my attention. Unfortunately it will be a month or so before I'm back to check it out. In the mean time here are my thoughts:
1) I most likely have an air leak at the hydraulic filter interface mounted on side of tank. Keep me straight, but this filter is downstream of the pump and sees negative pressures whereas the HST filter is upstream and sees only positive pressure?
2) The performance improvement over time is likely due to gasket expansion/sealing taking place at the filter interface and/or as fluid warms up the pump creates less negative pressure to bring the oil up from the reservoir?
This would explain why the colder it gets the more pronounced the problems are at startup.
3) Air ingestion in the suction line would that also account for the increased whine from the pump.
4) I did use WIX filters but wouldn't think filter failure or partial failure other than at the gasket sealing interface would result in what I'm experiencing.
Thoughts from you guys that know hydraulics??