My biggest problem is not that it needs to be cleaned up. My biggest problem is that the zoning ordinances have become about one thing and one thing only, especially since the Headlee Amendment passed in Michigan that restricts the rate our assessments can rise to the rate of inflation (in exchange for going from a 4% sales tax to a 6% sales tax). That is the almighty dollar. The only way they can raise our assessment higher and get around the Headlee Amendment is if we have to pull a permit for everything because we are "improving" our property. This has created the almighty and not directly elected planning and zoning department that justifies the existence of zoning enforcement officers by catching and fining or collecting permit fees from anyone they can.
In the old days, the guy that ran the neighbourhood just sent around the "boys" for a skakedown. What you describe is just the modern version.
Follow the money..... always good advice.
Rgds, D.