You won't increase the RPM of the engine above the RPM of the coupled implement (taking gear ratios into account). But you will most surely increase the RPM of the engine above (perhaps way above) the normal RPM of the engine at the given throttle setting.
Best example I can think of is a car with manual transmission. Get up to speed on a downhill and take your foot off the throttle. The engine RPMs will then be driven by the inertia of the moving vehicle acting through the transmission, and most certainly be higher than the engine would turn at the same throttle (which would normally be idle speed). We think of this as engine braking, but in reality the inertia of the vehicle is over-running the engine through the transmission and gearing.
So if you throttle a tractor back with a large implement engaged and turning, you are in effect using the tractor's engine as a brake to hold back the implement and slow it down.
But there is no real benefit and there can be some potential disadvantages.
With the independent PTO I just turn the PTO off first, then throttle down.
rbtjr- if the cutter blades are hanging up on each other that's a defect and you should talk to the seller. Also you should talk to your Kubota dealer about the PTO engagement. There may be an adjustment they can make, or advice they can give. If it eventually causes a problem that requires warranty work there will be a record.
Recently there was a post on this forum that linked to an electronic device made to ease PTO engagement. It works by sensing the PTO shaft speed and turning the PTO engagement on and off as the shaft is coming up to speed, similar to a PID controller for an electric heater. I have some concerns about it wearing out parts, and I can't find it now, but if you can find it, it might be an option. I'd only try after exhausting the options with your dealer.
Thoughts?
What does the dealer say?
I think that is exactly the problem--the unique combination of the tractor PTO electric control coming on suddenly, and the mower being a 6' heavy duty mower with 4" wide blades. The mower is great when it gets up to speed--actually, when it gets by the initial jolt. Yes, I used this same tractor a couple of times with a lighter duty 5' rotary mower with 3" blades. It shook a lot on the PTO engagement but worked okay and not as violently as the new mower. The new mower's heavy duty 4" wide longer blades create more resistance against rotating from the resting position, and that combined with the sudden PTO off-on engagement do not go well together. Since I may not be able to dampen or soften the PTO engagement, I'm going to loosen the slip clutch on the mower. Actually, Ted Corriher of EA recommended that I loosen up the slip clutch to the point at which it slips when mowing heavy grass, run it a short while like that, and then tighten the clutch to the point at which it no longer slips in the same mowing conditions. Makes sense to me. Actually, the PTO engagements with the mower seem to get getting a little better, a little less violent. I suspect that that is due to the slip clutch already getting worn in a little and therefore better able to help absorb the shock.I would engage at an rpm slightly above idle. It may be a combination of this specific cutter with the electric PTO. Have you tried it on a different cutter?