Just a miserable update. The stump jumper is not perfectly straight, but isn't the problem. I can probably straighten it a bit using the press.
The problem is that the gear box mounting area has flexed terribly. I straightened it up a bit, which improved it, and welded where the factory did. Mowed heavy for an hour, and then hit one mount, and the mount area bent badly. I am shocked that I have used this for 5 years, and bought it used....and haven't had this trouble with it til now. The deck material is pretty thin IMO. I actually thought about getting a new one, but most I saw weren't any heavier duty, and were $1000 or more. What I really need if I ever get this fixed is some sort of roller in the middle front to keep it from burrying the front into the dirt when the rear tires dip into a dip or hole.
I have the blades off now, and am having trouble with the simplest of things: Getting the cotter pin out of the castle nut that holds the stump jumper on. The short end was broken off, and bent over. So I straightened that the best I could. The pin will not budge. I am considering drilling out the end to free up the pin. I'm sure the jumpper will be a thrill to get off the shaft when I get the nut off.
I think I will look at removing the stock mount and building a beefier one between the frame rails. This project is not starting off well!