Well crap, looks like I need to rebuild the engine. Started noticing a whole lot of crankcase blowby and a miss. Tore the engine down (hardest part was pulling the tank, they really don't make that easy) and took some measurements. The cross hatching in all 3 cylinders looked suspiciously good. I couldn't tell if the head had been off before or not.
I'm thinking someone might have honed it in the past with stock bore when it should have been pulled and bored oversized.
I took some measurements and she needs rebuilt
Cyl. aA___aB_____bA_____bB_____cA_____cB
1 84.02066 84.02574 84.02066 84.04098 84.0232 84.0232
2 84.02574 84.01812 84.02828 84.03844 84.03336 84.01558
3 84.01304 84.03844 84.0105 84.05622 84.01304 84.03844