If your walls are equally spaced, then you should be able to make one template and cut the rest of the rafters with no problem. If your walls are't equally spaced, then it changes your rafter dimensions.
I do this just often enough that I have to look at my carpentry reference books to make sure I'm on the right track and then I compare the rafter table measurements with the measurements I get on the calculator. Then I cut a pair of rafters and see if they actually fit.
The traditional method is to toenail the rafter in place, but metal connectors have a much stronger resistance to pull out and are easier for me at least than the toenail method. Whether or not the code requires them, they make for a stronger connection in your building. When it's all done, it's your building.