Yes I went from drums to an IBC tank (it's translucent) and 500 litres of tractor diesel. Then I saw water in the bottom and it all discoloured and stuff started growing. So I added a biocide and that seemed to fix it - after draining off the water no more formed.
So over last winter I drained the mower tank, vacuumed it out and cleaned the pickup pipe, mesh filter bowl, new spin-on fuel filter and filled it with biocided fuel. But now there was a bit of water in the separator again, and some brown solids, and the fuel in the tank is mud coloured!
So I'm going to dispose of all the old fuel, vacuum again, pump the fresh through as you say, and put the IBC tank on ebay!