Some people think the Ford water separator design is poor and allows fuel (and water) to get through when the filter gets full/blocked.
If you do enough searching on forums you will find some stories of water-in-fuel issues with Duramax trucks also. The difference is these are usually owners whose truck has suddenly went into limp mode, and replacing the fuel filter is usually a sufficient fix. I have read a few stories of guys who had injector damage but not many.
My personal belief is Ford is trying to wish away a fuel system design flaw that will eventually come back to haunt them in the form of a class action pay-out, warranty extensions for owners, and more reputation damage for their diesels.
OTOH I could easily be wrong and I will freely admit that I am a 'Chevy guy' so my opinion is probably a little biased. But I would buy a trusty 7.3 PSD in a second if the right deal came along.