First of all, my tractor is na only because a turbo version wasn稚 offered in that frame size machine, and storage considerations limited the size of tractor.
My mini ex is na, only because of budget and machine size storage constraints. Engine configuration was irrelevant in this case.
All other things being equal (which they rarely are), a na engine will offer better fuel economy in the part load region of the speed-load map because the turbo increases pumping losses at light loads, where you don稚 need more air for combustion. We once had a product rationalization program to replace a large displacement na engine, widely loved by the customers, with a smaller displacement but turbocharged engine of the same family. The development engineers could never match the bsfc map of the na engine because of the turbo induced losses.
Today, it could probably be done with the addition of newer technology like common rail, intercooling, and electronic turbo controls, but that all comes at a cost, and, yes, tractors are cost sensitive.
Fuel consumption (and smoke) hooks on an na engine as power is increased and, at higher power levels, the fuel economy, on a Brake specific basis, is better with the turbo. The turbo engine power range can obviously be extended over the na, and intercoolers, compounding, etc go even further.
These small utility tractors rarely operate at high output though, so the na would give better economy, again, all other things being equal. Turbo engines have far better potential for emission control.
The turbo does allow a power curve with higher torque rise, which is, in my experience more important than absolute power at rated speed. We used to shoot for a minimum torque rise of 15% on farm tractor applications when setting power curves. The relatively high torque rise keeps the engine from bogging as the implement or attachment engages the load.
Lack of torque rise is a point of dissatisfaction I personally have with my Kioti CK4010 SE.
A well designed turbo engine will have the same design life, durability qualification, and warranty targets as an na engine, and will have superior altitude capability.
That said, there痴 no getting around the fact that there are more moving parts and potential leak paths with a turbo. That痴 not an issue on a well designed engine though.
Sort of like arguing that manual windows are superior to roll up windows. That argument logic goes to stationary windows, or better yet, no windows are better yet....