So I just want to clarify that you are calculating for the 6000lbs per beam and not two single seperate 3000lb loads plus 250lbs evenly distributed for decking.
Being that your beams are narrow, do the connections (i.e. nails) have any appreciable effect on the top wood fibers being in compression?
Also, do you have a way to analyze the beams for torsional failure? I think some sort of bracing would be crucial for success in this instance. Some diagonal bracing would be very benefical here. I would consider very stronly going with much more than a 2 or 3x safety factor, 5 sounds much more reasonable. Wood decays outside no matter what.
Using steel plates for your transition areas from wood span to concrete support is an excellent idea and the gluing of members is also an excellent suggestion. Its not worth going cheap. Ove rdesign it in case you neglect something. Just my $.02