I've been reading this forum for years, but only just registered as I have extensive knowledge of acid staining concrete.
Sam- I think I see rough texture in some of your pics. That is abnormal and shouldn't be there. You don't say what's wrong with the stain job, but there are some things to consider with any acid stain job. The acid stain works by reacting with the free lime in the concrete. If the new slab is left unprotected, and things are spilled before staining, issues always arise. Things alike soda pop, tobacco juice, or even spit also react with the free lime in concrete. If something like that is spilled, the stain will ghost through as a lighter area. On the other hand, it's not unusual to have some white chalky, or crystalized residue. You may need to clean the residue a few times, but it will eventually go away as the concrete cures out completely.
I am a consultant to the commercial construction industry and whenever I'm involved in an acid stain project, I work hard to get the end user to understand that the process is pretty random and uncontrollable. I call it random coolness. I suggest you sawcut the slab into smaller sections. The sections should be scaled to the room size. Something like 1' to 2' squares on the diagonal might look good. You can then fill in the sawcuts with a colored epoxy for a tile effect. I suggest a dark color as it will darken over time anyway (like your pretty white joints will turn out black just due to use). I've been involved in several large commercial projects where we cut 4' squares on the diagonal and had people say "how did you get such big pieces of marble? That must have cost a fortune". I don't think an unscored, stained, floor would ever look very good. It really needs to be broken up.
I've been following you build for a long time- cool project. Thanks for sharing