Vizi,
Are you also doing the foundation excavation at the same time? If not I would contract the site and foundation work getting rid of all the stumps at the same time. Unless you have already looked at this and the cost is much higher?
Digging a foundation, grading and leveling in my experience usually clears an area 100x100 or 100x150 depending on the house size, then there is backfilling and grading the finished site.
Burning stumps is OK in some areas others not - they burn for days and getting then hauled away is $300 for a 20 yd load, $750 for a semi trailer load. So I would get some bids on all the site work you need first as $ can add up fast - Backhoe + stump hauling + Fill + Fuel + Time probably better part of $4K or more..