I'm putting together a similar deck on a set of old David Bradley running gear. From the local saw mill, I got 2x8 rough cut hemlock (real dimensions) for the beams, and 2x4's for the joists, and nice heavy 1 1/4 x 6's for the planks. That was pretty much the original setup which I ripped off, and it looks close to what you have. Not the heaviest duty, but I won't be doing much more than pumpkin hauling. I'm not notching the joists like you did, but utilizing all the u-bolt hardware which came off the original.
Question: I'm going to do 24-30 inch removable sides, presumably using tapered pocket clamps for 2x4 studs. I figure I'll have to run a "skirt" board down the sides (along the butt ends of the joists) to bolt the clamps into, probably just one of the 1 1/4 x 6 boards I have left over from the deck. How would you attach that? Just lag bolt into the end grain of the joists, and the side of the outer deck plank? Good enough?