i use flux core for most things because i don't have to worry about being closed in the shop. if i were welding body panels, then that's another story. if you've been using flux core for a while then you should know your capabilities and appearance quality pretty well. mig will generally allow for less spatter to clean up and no flux coating to chip off. there are spray compounds that i've seen that are supposed to reduce spatter, but i don't know how good they work.
i'm not a welder by trade, but i've got a lot of time using flux core for various projects over the years, and in most cases with clean metal, i'm making welds that when under paint would be hard to tell the difference from mig. i do as much to diminish the appearance quality of the weld and metal when removing the slag with a needle scaler as anything else. i'm an ok welder and with my ability i think that mig will give a slightly better appearance, but it won't magically fix any mistakes made by the welder - it's mainly just less spatter and maybe a slightly smoother surface. if your welds are lumpy and irregular with flux, they'll be the same with mig, you just won't have the spatter and flux to contend with.