The knocking developed very suddenly, in my opinion.
After replacing fuel lines, filters, fluids and re-coring the radiator I slowly started working the tractor. I idled it for an about a half hour and then shut it off for the night. The next day I drug a chain harrow around my fields for about an hour and then shut it down. The next day I ran a brush hog for 2-3 hours. All of those chores were done easily.
The next day I brought the tractor around to give it a bath (I didn't get water anywhere near the engine) so I could take some pics to show my father. When I started it up after the bath, it had the knock. A few weeks later I changed the injector out and now it knocks and smokes.
As far as the injector getting enough fuel... I don't know. Fuel comes out of the line when I loosen it, but I don't know what "enough fuel" is?