Hi Ryan,
Any progress with the problem? I'm curious to hear if you were able to fix it or not. I'm still wrestling with my PowerShuttle issue... I got the diagnostic tool, and it's showing the "41" error code - but when I go in and try to clear the code (using HF menu), it won't clear it. I also tried to re-calibrate the forward clutch, and it wouldn't allow it - but didn't give me any error codes saying why it wouldn't work. So, I figure either my ECM is bad and can't be worked with, or the diagnostic tool I have is broken (holding the "down" button, for example, doesn't do anything - which either means the tool is broken, or the ECM won't respond to it...). These electronics are a bit frustrating to deal with.