Having the inspection area and fuel pump look clean is certainly a good sign, whatever the issue is.
I am assuming that you don't have any existing fuel wet spots.
When you go over the fuel system looking for leaks, I would suggest loosening and then tightening each fitting sequentially from the fuel tank onward and listen if the engine has a problem. I would also disassemble and double check the fuel filter gasket and gasket surfaces for any crease, scratch, grit, or hair. It is a common place to get an air leak because of the vacuum. The same on the pressure side, loosen each nut, let diesel weep out and tighten it. Sometimes, it is a little grit on the fitting surface and cracking the fitting open flushes diesel out under high pressure and dislodges the offender. At the same time, if you loosen a fitting and it doesn't get worse, but the corresponding ones do, that suggests that that particular fuel line/fitting is your problem child.
Wear gloves when working on the high pressure side for protection against any high pressure streams of fuel.
All the best,
Peter