Fender issue:
I've done lots of plastic work and designed molds for a variety of parts.
The fact that only some of the fenders crack indicates that the design is probably not the major culprit. The design might be less forgiving or robust than would be desirable but how much safety factor are you willing to shell out cash for? Overdesign costs $$
Likely, the real problem is that the plastic molding process has been inconsistent. As the molten plastic is forced into the mold it flows in different directions. The flow of the plastic is a huge part of designing the mold itself. Many computer programs exist to simulate this flow and allow the mold designer to adjust sprues and gates to control the flow. In a part of this size and complexity it is a serious task and "it don't always do what it should". As the plastic flows, several "fronts" are moving simultaneously. These fronts collide and the molten plastic must "knit" together to form a solid homogeneous surface. This knitting of the material is critical to the strength of a structural part. It can be inhibited by a number of processing factors such as temperature of the mold, temp of the melt, low injection pressure and presence of mold release just to list a few. If the material is at the wrong temp when it collides it will not knit. Injection pressure must be right or the material will not be compacted properly. Mold release is required to allow the part to come out of the mold. If improperly applied it can actually push in front of the flowing material and prevent the material front from knitting. The problem is likely not a part design problem as much as a processing problem. Companies like Kubota do not make these parts. They are purchased from suppliers that specialize in plastic molding. Kubota does not design the mold or the processing parameters. These companies have their problems just like every other company. Odds are that some fenders will crack immediately, others will last indefinitely. Just depends on the particular shot, etc.
As for the battery cover, mine was a poor molding job. It was likely ejected from the mold too soon resulting in warpage. Its questionable whether or not the mold was built to the right dimensions. Maybe the guy that designed the part just "blew it" on a dimension or missed an engineering change to related parts. That happens unfortunately. The new one is a more forgiving design and fits great.
Keep in mind Kubota is ultimately responsible for the quality and performance of the tractor. They've probably been hammering the supplier to get their act together since the first occurrence. The new fender design is probably an effort to overdesign the problem area so process variations don't result in breakage. Or possibly, just a mod to allow a visual identification of parts produced after some process change.
By the way, right now I'm working with Komatsu on a project for their newest BHL. Much larger machine of course. Interestingly, it uses plastic fenders, curved loader arms, curved BH boom...