Well if you have flow that answers the pump question
Next is why those functions quit. Are they all on the same joystick? Do any of the junctions on that joystick work? Reason for asking is valves are hydraulic pilot controlled by joystick. Just wondering if you possibly lost pilot pressure to that joystick. There is a manifold assembly with ports A, B, and C controlled by 3 individual solenoid valves. I am 99% certain they are pilot pressure lines that feed the joystick but the joysticks are not shown on the schematic you attached. If one of those valves is not shifting it would prevent pilot flow from getting to that part of the circuit.
Just tossing out ideas on what might cause the problem you are experiencing.
Wish you the best in resolving this problem